ssvR_plot_bam_mismatch: ssvR_plot_bam_mismatch
In jrboyd/ssvRecipes: Recipes using seqsetvis

View source: R/functions_alignment_mismatch.R

ssvR_plot_bam_mismatch

R Documentation

ssvR_plot_bam_mismatch

Description

ssvR_plot_bam_mismatch

Usage

ssvR_plot_bam_mismatch(
  bamfile,
  qgr,
  gen_ref = BSgenome.Hsapiens.UCSC.hg38::Hsapiens,
  min_count = 5,
  as_fraction = FALSE,
  return_data = FALSE
)

Arguments

qgr

Examples

library(GenomicRanges)
qgr = GRanges("chr21:34815000-34835000")
bam_file = file.path("/slipstream/galaxy/uploads/working/qc_framework/output_drugs_with_merged_inputs/MCF10A_ctrl_input_pooled/MCF10A_ctrl_input_pooled.bam")
ssvR_plot_bam_mismatch(bam_file, qgr)

jrboyd/ssvRecipes documentation built on May 22, 2022, 7:07 a.m.