ssvR_plot_ideogogram: ssvR_plot_ideogogram

In jrboyd/ssvRecipes: Recipes using seqsetvis

ssvR_plot_ideogogram

Description

ssvR_plot_ideogogram

Usage

ssvR_plot_ideogogram(
  gen = "hg38",
  chr_to_show = paste0("chr", c(1:22, "X", "Y")),
  gr_highlights = NULL,
  bfc = BiocFileCache::BiocFileCache(),
  grIdeo = NULL,
  ideo_ymin = -1,
  ideo_ymax = 0,
  highlight_fill = "green",
  highlight_color = NA,
  highlight_alpha = 0.5,
  highlight_name = "highlight",
  facet_cols = 1,
  facet_by_row = FALSE,
  print_plot = TRUE,
  plot_title = ""
)

Arguments

highlight_alpha

Examples

ideo_res = ssvR_plot_ideogogram(facet_cols = 2)

jrboyd/ssvRecipes documentation built on May 22, 2022, 7:07 a.m.