track_ref: track_ref

In jrboyd/ssvRecipes: Recipes using seqsetvis

track_ref

Description

track_ref

Usage

track_ref(
  ref = "~/gencode.v28.annotation.gtf.gz",
  qgr,
  flip_x = FALSE,
  exon_height = 0.5,
  intron_thickness = 2,
  show_tss = FALSE,
  tss_size = 3,
  tss_color = "red",
  return_data = FALSE
)

Arguments

debug

Examples

ref = rtracklayer::import.gff(ref, format =  "gtf", feature.type = "exon")
qgr = range(subset(ref, gene_name == "GREB1"))
qgr
track_ref(ref, qgr)

track_ref(ref, qgr, show_tss = TRUE)

jrboyd/ssvRecipes documentation built on May 22, 2022, 7:07 a.m.