writeBigBed: Write gr to bigbed file

In jrboyd/ssvRecipes: Recipes using seqsetvis

Write gr to bigbed file

Description

Write gr to bigbed file

Usage

writeBigBed(
  gr,
  bbf,
  bedf = sub("\\.bb$", "\\.bed", bbf),
  chrSizes = "~/hg38_chrsizes.txt",
  cleanup_beds = TRUE
)

Arguments

gr	gr to save
bbf	name of final output bigbed file
bedf	name of intermediate bedfiles
chrSizes	chrSizes file to use, default is hg38
cleanup_beds	remove beds when done? TRUE

Value

path to big bed file

jrboyd/ssvRecipes documentation built on May 22, 2022, 7:07 a.m.