writeFastaFromGR: write a fasta file of specified read_size from reference...

In jrboyd/ssvRecipes: Recipes using seqsetvis

write a fasta file of specified read_size from reference sequence for alignment

Description

write a fasta file of specified read_size from reference sequence for alignment

Usage

writeFastaFromGR(
  gr,
  fasta_file,
  mc = parallel::detectCores() - 4,
  genome = BSgenome.Hsapiens.UCSC.hg38::Hsapiens,
  read_size = 75,
  wrap = 100
)

Arguments

gr	region to generate reads for
fasta_file	path to output fasta file
mc	number of cores to use. default is half of max.
genome	BSgenome to use
read_size	size of reads to make

jrboyd/ssvRecipes documentation built on May 22, 2022, 7:07 a.m.