writeFastaFromSeq: write a fasta file of specified read_size from reference...
In jrboyd/ssvRecipes: Recipes using seqsetvis
View source: R/functions_multimapping.R
writeFastaFromSeq R Documentation
write a fasta file of specified read_size from reference sequence for alignment
Description
write a fasta file of specified read_size from reference sequence for alignment
Usage
writeFastaFromSeq(
mySeq,
fasta_file,
mc = parallel::detectCores() - 4,
read_size = 75,
wrap = 100
)
Arguments
fasta_file
path to output fasta file
mc
number of cores to use. default is half of max.
read_size
size of reads to make
seq
the seq
genome
BSgenome to use
jrboyd/ssvRecipes documentation built on May 22, 2022, 7:07 a.m.
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View source: R/functions_multimapping.R
| writeFastaFromSeq | R Documentation |
write a fasta file of specified read_size from reference sequence for alignment
Description
write a fasta file of specified read_size from reference sequence for alignment
Usage
writeFastaFromSeq( mySeq, fasta_file, mc = parallel::detectCores() - 4, read_size = 75, wrap = 100 )
Arguments
fasta_file |
path to output fasta file |
mc |
number of cores to use. default is half of max. |
read_size |
size of reads to make |
seq |
the seq |
genome |
BSgenome to use |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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