Files in js2264/periodicDNA
Set of tools to identify periodic occurrences of k-mers in DNA sequences
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.github/workflows/pr-commands.yaml
.github/workflows/test-coverage.yaml
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
R/GRanges.R
R/bigwigs.R
R/data.R
R/globals.R
R/iterations.R
R/periodicity.R
R/plot.R
R/track.R
R/utils.R
README.md
codecov.yml
data/ce11_ATACseq.rda
data/ce11_TSSs.rda
data/ce11_WW_10bp.rda
data/ce11_all_REs.rda
data/ce11_proms.rda
data/ce11_proms_seqs.rda
man/ce11_ATACseq.Rd
man/ce11_TSSs.Rd
man/ce11_WW_10bp.Rd
man/ce11_all_REs.Rd
man/ce11_proms.Rd
man/ce11_proms_seqs.Rd
man/figures/TT-10bp-periodicity_tissue-spe-TSSs.png
man/figures/TT_tissue-specific-classes.png
man/figures/WW-TT-AA-10bp-periodicity_tissue-spe-TSSs.png
man/figures/WW_tissue-specific-classes.png
man/figures/logo.png
man/figures/periodicityDNA_principle.png
man/figures/ubiquitous-promoters_TT-periodicity.png
man/getPeriodicity.Rd
man/getPeriodicityTrack.Rd
man/getPeriodicityWithIterations.Rd
man/plotAggregateCoverage.Rd
man/plotPeriodicityResults.Rd
man/setUpBPPARAM.Rd
man/theme_ggplot2.Rd
pkgdown/_pkgdown.yml
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
tests/testthat.R
tests/testthat/test-generateperiodicitytrack.R
tests/testthat/test-getPeriodicity.R
tests/testthat/test-utils.R
tests/testthat/test-withIterations.R
vignettes/periodicDNA.Rmd
