Man pages for js2264/periodicDNA
Set of tools to identify periodic occurrences of k-mers in DNA sequences
| ce11_all_REs | ce11_all_REs |
| ce11_ATACseq | ce11_ATACseq |
| ce11_proms | ce11_proms |
| ce11_proms_seqs | ce11_proms_seqs |
| ce11_TSSs | ce11_TSSs |
| ce11_WW_10bp | ce11_WW_10bp |
| getPeriodicity | A function to compute k-mer periodicity in sequence(s). |
| getPeriodicityTrack | Function to generate a k-mer periodicity track |
| getPeriodicityWithIterations | A function to compute PSDs with iterations |
| plotAggregateCoverage | A function to plot aggregated signals over sets of GRanges |
| plotPeriodicityResults | Plot the output of getPeriodicity() |
| setUpBPPARAM | setUpBPPARAM |
| theme_ggplot2 | Personal ggplot2 theming function, adapted from... |
