findGenomeMotifs: Find non overlapping CG, GC and GCG/CGC motifs in genome
In jsemple19/nanodsmf: Analyse nanopore dual enzyme single molecule footprinting data (nanoDSMF)
Description
Usage
Arguments
Value
Examples
Description
Find non overlapping CG, GC and GCG/CGC motifs in genome
Usage
1
findGenomeMotifs(genome)
Arguments
genomeFile
A DNAstringSet, path to FASTA file or BSgenome for the genome sequence.
Value
A GenomicRanges containing non ovelapping CG GC and GCGorCGC motifs. The context is shown in the metadata
Examples
1
jsemple19/nanodsmf documentation built on July 23, 2020, 7:40 a.m.
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Description Usage Arguments Value Examples
Description
Find non overlapping CG, GC and GCG/CGC motifs in genome
Usage
1 | findGenomeMotifs(genome)
|
Arguments
genomeFile |
A DNAstringSet, path to FASTA file or BSgenome for the genome sequence. |
Value
A GenomicRanges containing non ovelapping CG GC and GCGorCGC motifs. The context is shown in the metadata
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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