mergeCGandGCmat: Merge CG and GC methylation matrices

In jsemple19/nanodsmf: Analyse nanopore dual enzyme single molecule footprinting data (nanoDSMF)

Description

Merge CG and GC methylation matrices

Usage

mergeCGandGCmat(tsvCG, tsvGC, genome)

Arguments

genome	A BSgenome, DNAstring or path to fasta file for the genome of interest
CGmat	A tab serparated values text file where individual CG motifs have been split
GCmat	A tab serparated values text file where individual GC motifs have been split

Value

A tsv for both motifs with three contexts: HCG, GCH, GCGorCGC

Examples

mergeCGandGCtsv(splitMotifs(MSssI_CpG,"CG"),splitMotifs(MSssI_GpC,"GC"),ttTi5605dna)

jsemple19/nanodsmf documentation built on July 23, 2020, 7:40 a.m.