Files in jsigao/prioritree
A utility for improving phylodynamic analyses in BEAST
.gitignore
DESCRIPTION
NAMESPACE
R/defaults.R
R/io_helpr.R
R/launch_app.R
R/plot_helpr.R
R/posteriorpredictive_functions.R
R/posteriorpredictive_helpr.R
R/tex_helpr.R
R/xml_helpr.R
README.md
inst/app/server.R
inst/app/ui.R
inst/app/www/prism-atomdark.css
inst/app/www/prism-dracula.css
inst/app/www/prism-hopscotch.css
inst/app/www/prism-okaidia.css
inst/app/www/prism-tomorrownight.css
inst/app/www/prism-twilight.css
inst/app/www/prism-xonokai.css
inst/app/www/prism.js
inst/extdata/analyses_setup/HIV_datasetA_MCC.tree
inst/extdata/analyses_setup/HIV_datasetA_sample.trees
inst/extdata/analyses_setup/discrete_trait.txt
inst/extdata/post_processing/ctmc/HIV_datasetA_MLE_run1.log
inst/extdata/post_processing/ctmc/HIV_datasetA_MLE_run2.log
inst/extdata/post_processing/ctmc/HIV_datasetA_datacloning20_run1.log
inst/extdata/post_processing/ctmc/HIV_datasetA_datacloning20_run2.log
inst/extdata/post_processing/ctmc/HIV_datasetA_datacloning5_run1.log
inst/extdata/post_processing/ctmc/HIV_datasetA_datacloning5_run2.log
inst/extdata/post_processing/ctmc/HIV_datasetA_posterior_run1.log
inst/extdata/post_processing/ctmc/HIV_datasetA_posterior_run1.trees
inst/extdata/post_processing/ctmc/HIV_datasetA_posterior_run2.log
inst/extdata/post_processing/ctmc/HIV_datasetA_posterior_run2.trees
inst/extdata/post_processing/ctmc/HIV_datasetA_underprior_run1.log
inst/extdata/post_processing/ctmc/HIV_datasetA_underprior_run2.log
inst/extdata/post_processing/exphyper/HIV_datasetA_MLE_run1.log
inst/extdata/post_processing/exphyper/HIV_datasetA_MLE_run2.log
inst/extdata/post_processing/exphyper/HIV_datasetA_datacloning20_run1.log
inst/extdata/post_processing/exphyper/HIV_datasetA_datacloning20_run2.log
inst/extdata/post_processing/exphyper/HIV_datasetA_datacloning5_run1.log
inst/extdata/post_processing/exphyper/HIV_datasetA_datacloning5_run2.log
inst/extdata/post_processing/exphyper/HIV_datasetA_posterior_run1.log
inst/extdata/post_processing/exphyper/HIV_datasetA_posterior_run1.trees
inst/extdata/post_processing/exphyper/HIV_datasetA_posterior_run2.log
inst/extdata/post_processing/exphyper/HIV_datasetA_posterior_run2.trees
inst/extdata/post_processing/exphyper/HIV_datasetA_underprior_run1.log
inst/extdata/post_processing/exphyper/HIV_datasetA_underprior_run2.log
inst/extdata/tool_input/about.md
inst/extdata/tool_input/literature.bib
man/description_deltaprior.Rd
man/description_muprior.Rd
man/draw_nevents_conditional.Rd
man/fill_DTMCmats.Rd
man/historySimulator_teststatisticsComputer.Rd
man/sim_history.Rd
man/sim_history_branch_conditional.Rd
man/sim_history_conditional.Rd
man/sim_history_piece_conditional.Rd
man/sim_history_unconditional.Rd
man/tex_analysis.Rd
man/tex_bayesianinference.Rd
man/tex_data.Rd
man/tex_dcanalysis.Rd
man/tex_deltaprior.Rd
man/tex_model.Rd
man/tex_muprior.Rd
man/tex_posterioranalysis.Rd
man/tex_powerposterior.Rd
man/tex_prior.Rd
man/tex_prioranalysis.Rd
man/tex_summarystats.Rd
man/xml_clockratemodel.Rd
man/xml_discretetraitdata.Rd
man/xml_discretetraitmodel.Rd
man/xml_monitors.Rd
man/xml_phyloctmc.Rd
man/xml_treemodel.Rd
prioriTree.Rproj
