xml_discretetraitdata: Generate the data block in a BEAST XML file.

In jsigao/prioritree: A utility for improving phylodynamic analyses in BEAST

Generate the data block in a BEAST XML file.

Description

Generate the data block in a BEAST XML file.

Usage

xml_discretetraitdata(
  states_dat,
  taxon_name,
  discrete_trait_name,
  date_name = NULL,
  lheat = 1,
  under_prior = F
)

Arguments

states_dat	a data-frame object containing at least two columns: one for the name of each tip (column name specified by taxon_name), and the other for the trait state of each tip (column name specified by discrete_trait_name)
taxon_name	name of the column containing tip names
discrete_trait_name	name of the column containing tip states
date_name	name of the column containing tip sampled dates
lheat	Number of data clones
under_prior	Whether to infer the joint prior distribution (default false) or the joint posterior distribution

Value

XML code specifying data usage

jsigao/prioritree documentation built on Jan. 9, 2023, 5:35 a.m.