historySimulator_teststatisticsComputer: Simulate discrete-character histories using the inferred...

In jsigao/prioritree: A utility for improving phylodynamic analyses in BEAST

Simulate discrete-character histories using the inferred posterior distribution and compute posterior-predictive summary statistics using the simulated histories

Description

Simulate discrete-character histories using the inferred posterior distribution and compute posterior-predictive summary statistics using the simulated histories

Usage

historySimulator_teststatisticsComputer(
  states_dat,
  taxon_name,
  discrete_trait_name,
  tree_path,
  log_path,
  simsamples_num = 1000L,
  simulated_outpath
)

Arguments

states_dat	A data-frame object containing at least two columns: one for the name of each tip (column name specified by taxon_name), and the other for the trait state of each tip (column name specified by discrete_trait_name).
taxon_name	Name of the column containing tip names.
discrete_trait_name	Name of the column containing tip states.
tree_path	File path of the posterior distribution of trees that will be read in to simulated over.
log_path	File path of the posterior distribution of parameters whose values will be used in the simulation.
simsamples_num	Number of histories to simulate.
simulated_outpath	File path to write the simulated data to.

Value

A data-frame object that contains the simulated and observed values of the two summary statistics

jsigao/prioritree documentation built on Jan. 9, 2023, 5:35 a.m.