tex_prioranalysis: Generate the description (in the selected format) of MCMC...

In jsigao/prioritree: A utility for improving phylodynamic analyses in BEAST

Generate the description (in the selected format) of MCMC simulations where we infer the joint prior distribution.

Description

Generate the description (in the selected format) of MCMC simulations where we infer the joint prior distribution.

Usage

tex_prioranalysis(
  mcmc_chainlength = 1,
  mcmc_samplingfreq = 1,
  mcmc_numreplicates = 2,
  format = c("HTML", "Latex", "Markdown")
)

Arguments

mcmc_chainlength	Number of MCMC generations to run the analysis
mcmc_samplingfreq	Every number of MCMC generations to log to the output
mcmc_numreplicates	Number of MCMC replicates to run
format	One of "HTML", "Latex", or "Markdown".

Value

a paragraph (in the selected format) describing the MCMC simulations inferring the joint prior distribution.

Examples

tex_prioranalysis(1000000, 1000, 2)

jsigao/prioritree documentation built on Jan. 9, 2023, 5:35 a.m.