Man pages for jsilve24/philr
Phylogenetic partitioning based ILR transform for metagenomics data
| annotate_balance | annotate_balance |
| buildilrBasep | Weighted ILR Contrast Matrix |
| calculate.blw | Calculate Branch Length Weightings for ILR Coordinates |
| convert_to_long | Converts wide format ILR transformed data to long format |
| g.colMeans | Geometric Means of Columns |
| g.rowMeans | Weighted Geometric Means of Rows |
| mean_dist_to_tips | Mean distance from internal nodes to descendant tips |
| miniclo | miniclo |
| name.balance | Name a balance (coordinate) based on taxonomy |
| named_rtree | Generate random tree with named internal nodes |
| name_nodenumber_conversion | Convert between node/tip labels and integer node numbers |
| philr | Data transformation and driver of PhILR. |
| philrInv | Inverse of PhILR Transform |
| phylo2sbp | Create Sequential Binary Partition from Phylogenetic Tree |
| shift | Shift data to origin given by p |
| weighted_clr | Weighted CLR Transform |
| weighted_ilr | Weighted ILR Transform |
