NEWS.md

In jsta/glatos: A package for the Great Lakes Acoustic Telemetry Observation System

glatos 0.4.0

2019-11-12

New features

• functions

  • convert_glatos_to_att
  • convert_otn_erddap_to_att

• example data

  • walleye_att
  • blue_shart_att

Minor changes

• make_frames

  • add argument show_progress (default = TRUE) to optionally supress progress bars
  • issue #74

• interpolate_path

  • add argument show_progress (default = TRUE) to optionally supress progres bars
  • issue #74

• calc_collision_probs

  • in help examples, make separate plots for detection and collision probs
  • issue #77

• make_video

  • issue #64
  • return output file name
  • add diagnostic_mode arg to optionally return ffmpeg output (hide by default)
  • add warning when output file exists and overwrite = FALSE

• adjust_playback_time

  • return output file name
  • add diagnostic_mode arg to optionally return ffmpeg output (hide by default)
  • add warning when output file exists and overwrite = FALSE

glatos 0.3.2

2019-10-17

bug fixes and minor changes

• vrl2csv

  • fixed bug where output csv file names were not returned when input was multiple VRL file names. A vector of output CSV file names is now returned.
  • make separate call to VUE --convert-files for each VRL file.
  • add progress bar
  • improve error messaging.

• detect_transmissions

  • fixed bug where 'trns_x' and 'trns_y' in data slot of output was not converted to input coordinate reference system when sp_out = TRUE.

• make_frames

  • fixed bug where receivers were not displayed near the end of the time series in the images (and videos) when some receivers were missing recovery data (issue #79).

• abacus_plot

  • added more flexible optional plotting arguments, including 'xlim' to set custom x limits.
  • fixed bug where plot title (specified by main argument) was not included in plot (issue #70)
  • deprecated show_receiver_status argument. Receiver status will be shown on plot whenever 'receiver_history' is given.

glatos 0.3.1

2019-02-27

bug fixes

• fix missing brackets in glatos.Rd

glatos 0.3.0

2019-02-26

New features

• functions

  • receiver_efficiency
  • residence_index
  • read_otn_deployments
  • install_ffmpeg
  • check_dependencies

• vignettes and documentation

  • added data-loading, data-requirements, receiver_efficency, residence_index

Minor changes

• detection_events

  • output data.table or tibble object if input is either of those and data.frame otherwise
  • faster (e.g., 11 sec vs 31 sec for 7.2M records on wimpy laptop)
  • coerce 'time_sep' argument to numeric if quoted and error if it cannot be coerced to numeric

• crw_in_polygon

  • changed sampling algorithm to mimimize stuck-at-boundary errors
  • added option to input SpatialPolygons object
  • added explicit coordinate reference system (EPSG 3175 - Great Lakes projected CRS) so that default units are in meters and simulations are done in that CRS. Other CRS can be specified for other areas (via EPSG argument).
  • added option to return spatial object or simple data frame.

• transmit_along_path

  • added option to input SpatialPolygons object
  • added explicit coordinate reference system (EPSG 3175 - Great Lakes projected CRS) so that default units are in meters and simulations are done in that CRS. Other CRS can be specified for other areas (via EPSG argument).
  • added option to return spatial object or simple data frame.

• detect_transmissions

  • added option to input SpatialPolygons object
  • added explicit coordinate reference system (EPSG 3175 - Great Lakes projected CRS) so that default units are in meters and simulations are done in that CRS. Other CRS can be specified for other areas (via EPSG argument).
  • added option to return spatial object or simple data frame.

• abacus_plot

  • added optional arguments show_receiver_status and receiver_history to allow receiver history status to be added to plot (issue #36)
  • added optional arguments x_res and x_format to specify x-axis tick mark spacing and format (issue #30)
  • removed input arguments that could also be passed via ellipses (issue #35)

• position_heat_map

  • corrected accuracy issues by converting lat-lon to UTM (issue #8)
  • added optional argument abs_or_rel to specify it output is absolute numbers of fish are relative; simplified output so that only a single output type occurs in a given call
  • Changed output to kmz instead of kml
  • new folder is only created when output is png or kmz

• dropped fasttime as a depenedency and uses lubridates fasttime implementation instead

• Update sysdata detection schema for OTN

glatos 0.2.7

2018-08-29

Minor changes

• interpolate_path

  • added status bars during each of three major steps and improved messaging (2018-08-29)

• vector_heading

  • allow input coordinates as longitude and latitude (decimal degrees) (2018-08-03)

glatos 0.2.6

2018-06-11

Minor changes and bug fixes

• read_otn_detections
  • fix bug that indexed columns by position, meaning columns had to be orderd exactly as in spec (issue #52)
• read_glatos_detections
  • fix bug that indexed columns by position, meaning columns had to be orderd exactly as in spec (issue #52)
• read_glatos_receivers
  • fix bug that indexed columns by position, meaning columns had to be orderd exactly as in spec (issue #52)

glatos 0.2.5

2018-03-14

New features

• added check_dependencies() for checking if gdal and ffmpeg can be called (issue #40)

Minor changes and bug fixes

• adjust_playback_time()
  • allow spaces in file names and paths (issue #45)
• interpolate_path()
  • trigger error when 'trans' is not a transition object (issue #42)
• make_frames()
  • fixed "cannot allocate vector" error when optional plot arg is vector (issue #47)
• make_transition()
  • allow polygon to be input as SpatialPolygonsDataFrame (issue #37)

glatos 0.2.4

2018-03-06

Minor changes and bug fixes

• make_video()
  • added support for input and output directories containing spaces (issue #38)
    • check if input directory exists and error/message if not
    • create output directory if it does not exist

glatos 0.2.3

2018-02-25

Major changes

• A complete overhaul since v0.1.3. This version is no longer compatible with previous.
  • Adopt style notation suggested by Wickham (R Packages book)
  • All previous camel-case function names are now snake-case

New features

• Added data loading functions
  • read_glatos_detections
  • read_otn_detections
  • read_glatos_workbook
  • read_glatos_receivers
  • read_vemco_tag_specs
• Added data processing, filtering, and summarizing functions
  • min_lag
  • real_sensor_values
  • summarize_detections
• Added animation functions
  • adjust_playback_time
  • make_frames
  • make_video
  • make_transition

glatos 0.1.3

2017-03-01

- initial release on OTN gitlab

jsta/glatos documentation built on July 11, 2022, 7:01 a.m.