jtimonen/lgpr
Longitudinal Gaussian Process Regression

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Search the jtimonen/lgpr package
Vignettes
Functions
498
Source code
71
Man pages
68
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jtimonen/lgpr: Longitudinal Gaussian Process Regression
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API

API for jtimonen/lgpr
Longitudinal Gaussian Process Regression

Global functions
*,lgpterm,lgpterm-method Man page
+,lgprhs,lgprhs-method Man page
+,lgprhs,lgpterm-method Man page
+,lgpterm,lgpterm-method Man page
.onAttach Source code
GaussianPrediction Man page
GaussianPrediction-class Man page
KernelComputer Man page
KernelComputer-class Man page
Prediction Man page
Prediction-class Man page
add_c_layer_line Source code
add_c_layer_ribbon Source code
add_dis_age Man page Source code
add_factor Man page Source code
add_factor_crossing Man page Source code
add_g_layer_faceting Source code
add_g_layer_fit Source code
add_g_layer_ribbon Source code
add_g_layer_signal Source code
add_to_columns Source code
adjusted_c_hat Man page Source code
allow_data_model_or_fit Source code
apply_reduce Source code
apply_scaling Man page Source code
arr3_select Source code
arr3_to_list Source code
array_to_arraylist Source code
as.character,lgpexpr-method Man page
as.character,lgpformula-method Man page
as.character,lgpterm-method Man page
as_character Man page
bet Man page Source code
beta_teff_idx_info Source code
call_fun Source code
check_all_leq Source code
check_allowed Source code
check_df_with Source code
check_dim Source code
check_false Source code
check_in_data Source code
check_integer_all Source code
check_interval Source code
check_length Source code
check_length_1_or Source code
check_length_geq Source code
check_lengths Source code
check_named Source code
check_non_negative Source code
check_non_negative_all Source code
check_not_named Source code
check_not_null Source code
check_null Source code
check_numeric Source code
check_positive Source code
check_positive_all Source code
check_response Source code
check_term_covariates Source code
check_term_factors Source code
check_type Source code
check_unique Source code
class_info Source code
class_info_fp Source code
clear_postproc Man page
clear_postproc,lgpfit-method Man page
color_palette Source code
colorset Source code
component_info Man page
component_info,lgpmodel-method Man page
component_names Man page
component_names,GaussianPrediction-method Man page
component_names,KernelComputer-method Man page
component_names,Prediction-method Man page
component_names,lgpfit-method Man page
component_names,lgpmodel-method Man page
contains_postproc Man page
contains_postproc,lgpfit-method Man page
convert_to_data_frame Source code
covariate_info Man page
covariate_info,lgpmodel-method Man page
covariate_info.cat Source code
covariate_info.cont Source code
create_components_encoding Source code
create_desc Source code
create_grouping_factor Source code
create_idx_expand Source code
create_idx_expand_picker Source code
create_kernel_computer Source code
create_model Man page Source code
create_model.covs_and_comps Man page Source code
create_model.formula Man page Source code
create_model.likelihood Man page Source code
create_model.options Man page Source code
create_model.prior Man page Source code
create_plot_df Man page Source code
create_scaling Man page Source code
create_startup_message Source code
data_types Source code
default_ppc_fun Source code
default_prior Source code
default_prior_common Source code
default_prior_effect_time_info Source code
determine_num_paramsets Source code
dinvgamma_stanlike Man page Source code
divide_by_num_trials Source code
dollar Source code
draw_f_prior Source code
draw_gp_components Source code
draw_pred Man page Source code
draw_pred.Prediction Source code
draw_pred.subroutine Source code
draw_prior_pred Source code
enclose_fun Source code
ensure_2dim Source code
ensure_len Source code
example_fit Man page Source code
fill_palette Source code
fill_prior Source code
fit_summary Man page Source code
formula_to_advanced Source code
fp_extrapolate Source code
fp_extrapolate.compute Source code
fp_gaussian Source code
fp_gaussian.compute Source code
gam Man page Source code
gam, Man page
get_chat Source code
get_component_encoding Source code
get_data Source code
get_draw_arr Source code
get_draw_arr_vec Source code
get_draws Man page Source code
get_model Man page
get_model,lgpfit-method Man page
get_num_comps Source code
get_num_obs Source code
get_num_obs_kc Source code
get_num_postwarmup_draws Source code
get_num_trials Source code
get_obs_model Source code
get_pred Man page Source code
get_pred.gaussian Source code
get_pred.sampled Source code
get_pred.sampled.f Source code
get_pred.sampled.f_comp Source code
get_pred.sampled.h Source code
get_sim_components Source code
get_stan_input Source code
get_stan_model Source code
get_stanfit Man page
get_stanfit,lgpfit-method Man page
get_teff_obs Source code
get_y Source code
get_y_name Source code
igam Man page Source code
igam, Man page
is_advanced_formula Source code
is_bin_or_bb Source code
is_f_sampled Man page
is_f_sampled,lgpfit-method Man page
is_f_sampled,lgpmodel-method Man page
is_pois_or_nb Source code
kernel Man page
kernel_all Source code
kernel_all_diag Source code
kernel_beta Man page Source code
kernel_bin Man page Source code
kernel_cat Man page Source code
kernel_const_all Source code
kernel_const_all_diag Source code
kernel_eq Man page Source code
kernel_ns Man page Source code
kernel_varmask Man page Source code
kernel_zerosum Man page Source code
kernelcomp.create_input Source code
kernelcomp.init Source code
kernelcomp.input_draws Source code
kernelcomp.input_x Source code
large_data_msg Source code
lgp Man page Source code
lgpexpr Man page
lgpexpr-class Man page
lgpfit Man page
lgpfit-class Man page
lgpformula Man page
lgpformula-class Man page
lgpmodel Man page
lgpmodel-class Man page
lgpr Man page
lgpr-package Man page
lgprhs Man page
lgprhs-class Man page
lgpscaling Man page
lgpscaling-class Man page
lgpsim Man page
lgpsim-class Man page
lgpterm Man page
lgpterm-class Man page
likelihood_as_int Source code
likelihood_as_str Source code
likelihood_list Source code
link Source code
link_inv Source code
list_if_named Source code
list_to_matrix Source code
log_info Source code
log_normal Man page Source code
log_normal, Man page
log_progress Source code
make_draw_df Source code
map_caseid_to_row Source code
map_f_to_h Source code
map_f_to_y Source code
map_factor_to_caseid Source code
matrix_to_list Source code
minus.append Source code
minus.prepend Source code
misc_info Source code
model_summary Man page Source code
new_x Man page Source code
normal Man page Source code
normal, Man page
normalize_rows Source code
null_if_all_nan Source code
num_components Man page
num_components,GaussianPrediction-method Man page
num_components,KernelComputer-method Man page
num_components,Prediction-method Man page
num_components,lgpfit-method Man page
num_components,lgpmodel-method Man page
num_evalpoints Man page
num_evalpoints,GaussianPrediction-method Man page
num_evalpoints,KernelComputer-method Man page
num_evalpoints,Prediction-method Man page
num_paramsets Man page
num_paramsets,GaussianPrediction-method Man page
num_paramsets,KernelComputer-method Man page
num_paramsets,Prediction-method Man page
object_to_model Source code
operations Man page
optimize_model Man page Source code
param_summary Man page Source code
parameter_info Man page
parameter_info,lgpmodel-method Man page
parse_expr Source code
parse_formula_advanced Source code
parse_prior_full Source code
parse_prior_full_pos Source code
parse_prior_full_teff Source code
parse_prior_full_unit Source code
parse_prior_single Source code
parse_rhs Source code
parse_term Source code
parse_y.latent Source code
parse_y.marginal Source code
pick_one_row_each Source code
plot,lgpfit,missing-method Man page
plot,lgpsim,missing-method Man page
plot_api_c Man page Source code
plot_api_g Man page Source code
plot_api_g_add_effect_times Source code
plot_api_g_create Source code
plot_api_g_create_aes Source code
plot_beta Man page Source code
plot_components Man page Source code
plot_data Man page Source code
plot_data_add_highlight_factor Source code
plot_data_aes Source code
plot_data_titles Source code
plot_draws Man page Source code
plot_effect_times Man page Source code
plot_f Man page Source code
plot_f.create.df_line Source code
plot_f.create.df_ribbon Source code
plot_f.create.line_arr Source code
plot_f.get_color_fac Source code
plot_inputwarp Man page Source code
plot_invgamma Man page Source code
plot_pred Man page Source code
plot_pred.create.df_line Source code
plot_pred.create.df_ribbon Source code
plot_pred.create_input Source code
plot_pred.process_args Source code
plot_sim Man page Source code
plot_sim.component Source code
plot_sim.component.df Source code
plot_sim.data Source code
plot_sim.data.title Source code
plot_sim.data.title_teff Source code
plot_warp Man page Source code
position_hyper_params Source code
posterior_f Source code
postproc Man page
postproc,lgpfit-method Man page
ppc Man page Source code
pred Man page Source code
pred_extrapolated_draws Source code
pred_gaussian Source code
prevent_too_large_mats Source code
prior_pred Man page Source code
prior_to_df Source code
prior_to_df_pos Source code
prior_to_df_teff Source code
prior_to_df_unit Source code
prior_to_num Man page Source code
prior_to_str Source code
prior_type_names Source code
priors Man page
progbar_print Source code
progbar_setup Source code
qinvgamma_stanlike Man page Source code
read_csv_url Source code
read_proteomics_data Man page Source code
reduce_factors_expr Source code
reduce_factors_gp Source code
reduce_rows Source code
relevances Man page Source code
relevances.default Source code
relevances.default.all Source code
relevances.default.comp Source code
relevances.default.noise Source code
rep_df Source code
repvec Source code
result_df Source code
return_true_or_errors Source code
rhs_to_advanced Source code
rhs_to_terms Source code
rhs_variables Source code
row_vars Source code
s4_generics Man page
sample_model Man page Source code
sample_param_prior Man page Source code
scale_color Source code
scale_fill Source code
select Man page Source code
select.all_draws Source code
select.all_thresholds Source code
select.compute_integral Source code
select.integrate Man page Source code
select.one_draw Source code
select_factors_and Source code
select_freq Man page Source code
select_freq.all_thresholds Source code
select_freq.integrate Man page Source code
set_c_hat Source code
set_c_hat_pred Source code
set_num_trials Source code
show Man page
show,GaussianPrediction-method Man page
show,KernelComputer-method Man page
show,Prediction-method Man page
show,lgpfit-method Man page
show,lgpformula-method Man page
show,lgpmodel-method Man page
show,lgprhs-method Man page
show,lgpsim-method Man page
show,lgpterm-method Man page
sim.apply_obs_onset_fun Source code
sim.check_covariates Source code
sim.check_too_far Source code
sim.create_f Man page Source code
sim.create_x Man page Source code
sim.create_x_D Source code
sim.create_x_check Source code
sim.create_x_dis_age Source code
sim.create_x_other Source code
sim.create_y Man page Source code
sim.data_to_observed Source code
sim.disease_effect Source code
sim.draw_categorical Source code
sim.draw_components Source code
sim.draw_continuous Source code
sim.draw_measurement_times Source code
sim.generate_names Source code
sim.kernels Man page Source code
sim.name_components Source code
sim.onsets_to_dis_age Source code
sim.parse_t_obs Source code
sim.rtgeom Source code
sim.scale_relevances Source code
simplify_list Source code
simplify_str Source code
simulate_data Man page Source code
split Man page
split_by_factor Man page Source code
split_data Man page Source code
split_formula Source code
split_random Man page Source code
split_within_factor Man page Source code
split_within_factor_random Man page Source code
squeeze_second_dim Source code
stan_data_components Source code
stan_data_covariates Source code
stan_data_expanding Source code
student_t Man page Source code
student_t, Man page
term_names Source code
term_to_numeric Source code
term_variables Source code
testdata_001 Man page
testdata_002 Man page
to_long_format Source code
uniform Man page Source code
uniform, Man page
validate Man page
validate_GaussianPrediction Man page Source code
validate_Prediction Man page Source code
validate_dimension_list Source code
validate_lengths Source code
validate_lgpexpr Man page Source code
validate_lgpfit Man page Source code
validate_lgpformula Man page Source code
validate_lgpscaling Man page Source code
var_mask Man page Source code
warn_msg_default_prior Source code
warp_input Man page Source code
jtimonen/lgpr documentation built on Oct. 12, 2023, 11:13 p.m.

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