R/infocyl.R

In jtlovell/PhyGenomicsData.PV2016: A data package for expression analysis in Switchgrass

#' @name infocyl
#' @title Experimental design data for the 2011 Pickle Cylinder drought experiment
#' @description A dataset containing the physiology and experimental design for
#' 62 individuals, grown in cylinders at the Pickle Research Campus of UT Austin.
#' More detailed information regarding the timing and days of sample collection
#' can be found in the supplementary material of Lovell, Shakirov et al.
#' @docType data
#' @usage infocyl
#' @format A data frame with 62 rows and 17 variables:
#' \describe{
#'   \item{pot}{A unique identifier for the plant, used as the repeated measure}
#'   \item{geno}{The Switchgrass genotype: only AP13}
#'   \item{id}{The library preparation ID. Corresponds to column names in countscyl}
#'   \item{trt}{The experimental treatment. Wet or Dry}
#'   \item{psi}{Midday leaf water potential, measured at the time of tissue collection}
#'   \item{RWC}{Relative water content of leaf, measured at the time of tissue collection}
#'   \item{LDMC}{Leaf dry mass content, measured at the time of tissue collection}
#'   \item{spad}{Leaf dry mass content, measured at the time of tissue collection}
#'   \item{psi.delta}{Leaf dry mass content, measured at the time of tissue collection}
#'   \item{HHMMSS}{Time of measurment / time of tissue collection}
#'   \item{FTime}{..., measured at the time of tissue collection}
#'   \item{Photo}{Photosynthetic rate, measured at the time of tissue collection}
#'   \item{Cond}{Stomatal Conductance, measured at the time of tissue collection}
#'   \item{Ci}{Internal Leaf CO2 concentration, measured at the time of tissue collection}
#'   \item{time_trt}{Character vector corresponding to all time*treatment combinations,
#'   Used for contrasts}
#'   \item{time_trt.mat}{Numeric vector corresponding to all time*treatment combinations,
#'   Used for contrasts}
#' }
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