API for juanbot/CoExpNets
Co-expression network management based on WGCNA + k-means
| Global functions | |
|---|---|
| UserGOenrichment | Source code |
| addNet | Man page Source code |
| addNetworkToDDBB | Man page Source code |
| annotate | Source code |
| applyFastKMeans | Source code |
| applyKMeans | Man page Source code |
| cellTypeByModule | Source code |
| corDistance | Source code |
| corWithCatTraits | Source code |
| createCentroidMatrix | Source code |
| detectAndInstallNetworks | Source code |
| dropGreyModule | Man page Source code |
| findCT | Source code |
| findData | Source code |
| findGO | Source code |
| findNet | Source code |
| findUserCT | Source code |
| fromAny2Ensembl | Man page Source code |
| fromAny2GeneName | Man page Source code |
| fromEnsembl2GeneName | Source code |
| fromEnsembl2GeneNameBM | Man page Source code |
| fromEnsembl2GeneNameWithGProf | Source code |
| fromEntrez2Ensembl | Man page Source code |
| fromGeneName2Ensembl | Man page Source code |
| fromGeneName2EnsemblBM | Man page Source code |
| fromXtIDToGeneSymbols19K | Man page Source code |
| functionalReportOnModule | Source code |
| genAnnotationCellType | Source code |
| genCrossTabPlot | Man page |
| generateBetaStudy | Man page Source code |
| getAndPlotNetworkLong | Man page Source code |
| getAvailableNetworks | Source code |
| getBestModuleCor | Source code |
| getBootstrapNetwork | Man page Source code |
| getBootstrapNetworkCl | Man page Source code |
| getCategoriesForGene | Source code |
| getCellTypeFromTissue | Man page Source code |
| getCovariates | Source code |
| getDownstreamNetwork | Man page Source code |
| getExchangedGenes | Source code |
| getExprDataFromTissue | Source code |
| getFriendlyNameForCategories | Source code |
| getFriendlyNameForColumnCategories | Source code |
| getGOFromTissue | Man page Source code |
| getGOFromTissues | Man page Source code |
| getGProfilerOnNet | Source code |
| getGenesFromModule | Source code |
| getICReport | Source code |
| getInfoFromTissue | Source code |
| getMM | Man page Source code |
| getMeanZsummaryPress | Source code |
| getMicTissues | Source code |
| getModuleFromGenes | Source code |
| getModuleMostRelevantGenes | Source code |
| getModulesFromTissue | Source code |
| getModulesMostRelevantGenes | Source code |
| getNetworkCategories | Man page Source code |
| getNetworkEigengenes | Source code |
| getNetworkFromTissue | Man page Source code |
| getNewCentroids | Source code |
| getPreservationStatistics | Source code |
| getPreservationStatisticsOneWay | Source code |
| getTOMFromTissue | Source code |
| getZSummary | Source code |
| getZsummary10MicTissues1Module | Source code |
| getZsummaryPress | Source code |
| globalReportOnGenes | Source code |
| globalReportOnGenesWEB | Source code |
| initDb | Man page Source code |
| loadConvTable | Man page Source code |
| loadDDBB | Source code |
| loadICsGOSim | Source code |
| milkNet | Man page Source code |
| plot.bootnet | Source code |
| plotEGClustering | Source code |
| plotGOZScoresUserList | Source code |
| plotMDS | Man page Source code |
| plotModSizes | Man page Source code |
| postCluster | Source code |
| preservationOneWay | Man page Source code |
| princePlot | Man page |
| print.bootnet | Source code |
| readTOM | Man page |
| removeTOM | Man page |
| reportAdd | Source code |
| reportExists | Source code |
| reportGet | Source code |
| reportOnFETGenes | Source code |
| reportOnGeneIDs | Man page Source code |
| reportOnGeneIDsGlobal | Man page Source code |
| reportOnGenes | Source code |
| reportOnGenesMultipleTissue | Source code |
| reportOnModule | Source code |
| saveDDBB | Source code |
| saveTOM | Man page |
| testGeneSet | Man page Source code |
