genCrossTabPlot: Title Module correspondence between two networks

In juanbot/CoExpNets: Co-expression network management based on WGCNA + k-means

Description

This method is useful to compare two networks created from the same gene pool but with different method or different expression data source. Note that genes must be in the same order within the two networks 'moduleColors' variable

Usage

genCrossTabPlot(
  colors1,
  colors2,
  tissue1 = "Net 1",
  tissue2 = "Net 2",
  plot.file = NULL
)

Arguments

colors1	The 'net$moduleColors' element of the 1st network
colors2	The 'net$moduleColors' element of the 2nd network
tissue1	Tissue label as used in the plot for the 1st network
tissue2	Tissue label as used in the plot for the 2nd network
plot.file	Convenient for generating a pdf when the number of modules is high so everything fits in the plot nicely.

Value

P-value matrix of the overlap between net 1 modules (rows) and net 2 modules (columns)

juanbot/CoExpNets documentation built on May 15, 2021, 12:20 p.m.