reportOnGeneIDs: Get known genes in a network

In juanbot/CoExpNets: Co-expression network management based on WGCNA + k-means

Description

This method will return a vector of logical values with the same length as 'genes'. It will get the IDs of tne network in 'tissue' and 'which.one' convert both genes and ids to Ensembl and check for matches. TRUE means the gene can be used in the analysis with that network. FALSE means either the gene is not used in that network or that it could be there with a different name or id format.

Usage

reportOnGeneIDs(tissue, which.one, genes)

Arguments

tissue	c
which.one	The category the network belongs to
genes	The list of gene IDs you want to use. They can be as gene symbols or Ensembl IDs

Value

A vector of logical values

juanbot/CoExpNets documentation built on May 15, 2021, 12:20 p.m.