API for juanbot/CoExpNets
Co-expression network management based on WGCNA + k-means

Global functions
UserGOenrichment Source code
addNet Man page Source code
addNetworkToDDBB Man page Source code
annotate Source code
applyKMeans Man page Source code
cellTypeByModule Source code
corDistance Source code
corWithCatTraits Source code
createCentroidMatrix Source code
dropGreyModule Man page Source code
findCT Source code
findData Source code
findGO Source code
findNet Source code
findUserCT Source code
fromAny2Ensembl Man page Source code
fromAny2GeneName Man page Source code
fromEnsembl2GeneName Source code
fromEnsembl2GeneNameBM Man page Source code
fromEnsembl2GeneNameWithGProf Source code
fromEntrez2Ensembl Man page Source code
fromGeneName2Ensembl Man page Source code
fromGeneName2EnsemblBM Man page Source code
fromXtIDToGeneSymbols19K Man page Source code
functionalReportOnModule Source code
genAnnotationCellType Source code
generateBetaStudy Man page Source code
getAndPlotNetworkLong Man page Source code
getAvailableNetworks Source code
getBestModuleCor Source code
getBootstrapNetwork Man page Source code
getBootstrapNetworkCl Man page Source code
getCategoriesForGene Source code
getCellTypeFromTissue Man page Source code
getCovariates Source code
getDownstreamNetwork Man page Source code
getExchangedGenes Source code
getExprDataFromTissue Source code
getFriendlyNameForCategories Source code
getFriendlyNameForColumnCategories Source code
getGOFromTissue Man page Source code
getGOFromTissues Man page Source code
getGProfilerOnNet Source code
getGenesFromModule Source code
getICReport Source code
getInfoFromTissue Source code
getMM Man page Source code
getMeanZsummaryPress Source code
getMicTissues Source code
getModuleFromGenes Source code
getModuleMostRelevantGenes Source code
getModulesFromTissue Source code
getModulesMostRelevantGenes Source code
getNetworkCategories Man page Source code
getNetworkEigengenes Source code
getNetworkFromTissue Man page Source code
getNewCentroids Source code
getPreservationStatistics Source code
getPreservationStatisticsOneWay Source code
getTOMFromTissue Source code
getZSummary Source code
getZsummary10MicTissues1Module Source code
getZsummaryPress Source code
globalReportOnGenes Source code
globalReportOnGenesWEB Source code
initDb Man page Source code
loadConvTable Man page Source code
loadDDBB Source code
loadICsGOSim Source code
milkNet Man page Source code
plot.bootnet Source code
plotEGClustering Source code
plotGOZScoresUserList Source code
plotMDS Man page Source code
plotModSizes Man page Source code
postCluster Source code
preservationOneWay Source code
princePlot Man page
print.bootnet Source code
readTOM Man page
removeTOM Man page
reportAdd Source code
reportExists Source code
reportGet Source code
reportOnFETGenes Source code
reportOnGeneIDs Man page Source code
reportOnGeneIDsGlobal Man page Source code
reportOnGenes Source code
reportOnGenesMultipleTissue Source code
reportOnModule Source code
saveDDBB Source code
saveTOM Man page
testGeneSet Man page Source code
juanbot/CoExpNets documentation built on July 7, 2020, 12:03 p.m.