Man pages for juanbot/CoExpNets
Co-expression network management based on WGCNA + k-means
| addNet | Title |
| addNetworkToDDBB | Title |
| applyKMeans | Title K-means refinement process after getting TOM and... |
| dropGreyModule | Title |
| fromAny2Ensembl | Title |
| fromAny2GeneName | Title |
| fromEnsembl2GeneNameBM | Title |
| fromEntrez2Ensembl | Title |
| fromGeneName2Ensembl | Title |
| fromGeneName2EnsemblBM | Title |
| fromXtIDToGeneSymbols19K | Title |
| genCrossTabPlot | Title Module correspondence between two networks |
| generateBetaStudy | Title |
| getAndPlotNetworkLong | Title Create a WGCNA network + TOM + some plots If you are... |
| getBootstrapNetwork | Title |
| getBootstrapNetworkCl | Title |
| getCellTypeFromTissue | Title |
| getDownstreamNetwork | getDownstreamNetwork - Create a network |
| getGOFromTissue | Title |
| getGOFromTissues | Title |
| getMM | Title Obtain the Module Membership of genes This function... |
| getNetworkCategories | Title |
| getNetworkFromTissue | getNetworkFromTissue - Get predefined network or create yours |
| initDb | Title |
| loadConvTable | Title |
| milkNet | Title |
| plotMDS | plotMDS - Testing gene sepparability with multi-dimensional... |
| plotModSizes | Title |
| preservationOneWay | Title Check whether one network module is preseved in a... |
| princePlot | Title |
| readTOM | Title Managing big TOM matrices |
| removeTOM | Title Managing big TOM matrices |
| reportOnGeneIDs | Get known genes in a network |
| reportOnGeneIDsGlobal | Get known genes in a set of networks |
| saveTOM | Title Managing big TOM matrices This function allows saving a... |
| testGeneSet | Title |
