eNetXplorer-internal: Internal eNetXplorer functions

Description Usage Details Author(s)

Description

Internal eNetXplorer functions

Usage

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eNetXplorerGaussian(x, y, family, alpha, nlambda, nlambda.ext, seed, scaled, 
n_fold, n_run, n_perm_null, QF.FUN, QF_label, cor_method, ...)

eNetXplorerBinomial(x, y, family, alpha, nlambda, nlambda.ext, seed, scaled,
n_fold, n_run, n_perm_null, QF.FUN, QF_label, fold_distrib_fail.max, ...)

eNetXplorerMultinomial(x, y, family, alpha, nlambda, nlambda.ext, seed, scaled,
n_fold, n_run, n_perm_null, QF.FUN, QF_label, fold_distrib_fail.max, ...)

plotMeasuredVsOOBNumer <- function (x, alpha.index, xlab, ylab, cex.lab, main, 
col.main, cex.main, instance.label, instance.label.cex, instance.label.offset,
instance.label.added.margin, col, ...)

plotMeasuredVsOOBCateg <- function (x, alpha.index, xlab, ylab, cex.lab, main, 
col.main, cex.main, instance.label, instance.label.cex, instance.label.offset,
transparency, jitter, cex.pt, class.color, ...)

plotFeatureCaterpillarMultinom(x, alpha.index, stat, feature.all, 
feature.pval.thres, feature.set, feature.top.n, signif.code, xlab, ylab, main, 
col.main, cex.main, line, subtitle, col.subtitle, line.subtitle, cex.subtitle, 
cexRow, cex.lab, legend, ...)

plotFeatureHeatmapMultinom(x, alpha.index, stat, feature.all, feature.pval.thres,
feature.set, feature.top.n, signif.code, xlab, ylab, main, col.main, cex.main, 
line, col, breaks, scale, Rowv, Colv, na.color, cexRow, srtRow, cexCol, srtCol,
margins, key, key.title, dendogram, trace, notecol.freq, notecol.coef, notecex,
subtitle1, col.subtitle1, line.subtitle1, cex.subtitle1, subtitle2, 
col.subtitle2, line.subtitle2, cex.subtitle2, ...)

Details

These functions are not part of the package application programming interface (API) and are not intended for use by end users. Functions eNetXplorerGaussian, eNetXplorerBinomial and eNetXplorerMultinomial are called by function eNetXplorer to run models of type linear, binomial and multinomial, respectively. Functions plotMeasuredVsOOBNumer and plotMeasuredVsOOBCateg are called by function plotMeasuredVsOOB to generate plots for linear and categorical models, respectively. For multinomial models, functions plotFeatureCaterpillarMultinom and plotFeatureHeatmapMultinom are called by functions plotFeatureCaterpillar and plotFeatureHeatmap, respectively.

Author(s)

Julian Candia and John S. Tsang
Maintainer: Julian Candia [email protected]


juliancandia/eNetXplorer documentation built on April 22, 2018, 9:20 p.m.