eNetXplorer-package: explores elastic net families for generalized linear models

Description Details Author(s) See Also Examples

Description

Provides a quantitative toolkit to explore elastic net families and to uncover correlates contributing to prediction under a cross-validation framework. Fits linear, binomial (logistic) and multinomial models.

Details

Package: eNetXplorer
Type: Package
Version: 1.0
Date: 2018-04-23
License: GPL-3

This package provides a full pipeline of analysis: eNetXplorer takes in x, y data to generate a family of elastic net models over a range of alpha values; summary generates a summary of results in tabular format; plot provides a variety of plots to visualize the results; summaryPDF generates a report in PDF format; and export creates plain text output files for downstream processing.

Author(s)

Julian Candia and John S. Tsang
Maintainer: Julian Candia [email protected]

See Also

eNetXplorer, summary, plot, summaryPDF, export

Examples

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## Not run: 
data(QuickStartEx)
fit = eNetXplorer(x=QuickStartEx$predictor,y=QuickStartEx$response,
family="gaussian",n_run=20,n_perm_null=10,seed=111)
summary(fit)
plot(fit,plot.type="measuredVsOOB",alpha.index=4)
suppressWarnings(summaryPDF(fit))
export(fit)

## End(Not run)

juliancandia/eNetXplorer documentation built on April 22, 2018, 9:20 p.m.