| adjustSpectra | Adjusts a spectra, assuming that the actual spectra is not... |
| create_error_df_general | Creates a dataframe of errors at given inaccuracies |
| create_error_df_pH | Creates a dataframe of errors in pH potential at given... |
| create_error_df_pH_multiple | Creates an error df at multiple inaccuracies, with multiple... |
| create_error_df_pLigand | Creates a dataframe of errors in pLigand potential at given... |
| create_error_df_pLigand_multiple | Creates an error df at multiple inaccuracies, with multiple... |
| create_error_df_redox | Creates a dataframe of errors in redox potential at given... |
| create_error_df_redox_multiple | Creates an error df at multiple inaccuracies, with multiple... |
| create_ranges_multiple | Takes in the input of create_error_df_redox_multiple and... |
| E | What is the redox potential (mV), given... |
| error_df-ligandSensor-method | Finds the error df of this ligand sensor at given... |
| error_df-pHSensor-method | Finds the error df of this pH sensor at given inaccuracies |
| error_df-redoxSensor-method | Finds the error df of this redox sensor at given inaccuracies |
| Error_E | What is the error in redox potential at a given redox... |
| Error_general | A general function for calculating the error in some... |
| Error_pH | What is the error in pH at a given pH, given some parameters... |
| Error_pLigand | What is the error in pLigand at a given pLigand, given some... |
| formatSpectraData | Formats sensor information into a dataframe suitable for... |
| fraction_deprot | What is the fraction deprotenated of a certain pH, given the... |
| getAbsError-R-redoxSensor-method | Get the error for a given sensor object at a given R |
| getAbsError-Sensor-method | Get the error for a given sensor object |
| getDb | Returns the sensor database |
| getE_deriv-redoxSensor-method | Get the derivative of the redox potential (dE/dR) for a redox... |
| getE-redoxSensor-method | Get the redox potential (E) for a redox sensor |
| getErrorTable-Sensor-method | Get the error table for a given sensor object |
| getFractionMax-Sensor-method | Get the fraction of sensors in the state corresponding to... |
| getpH-pHSensor-method | Get the pH of a pH sensor |
| getProperty-pHSensor-method | Get the pH of a pH sensor (wrapper) |
| getProperty-redoxSensor-method | Get the redox potential (E) for a redox sensor (wrapper) |
| getProperty-Sensor-method | Get the fraction of sensors in the state corresponding to... |
| getR-Sensor-method | Method to get an array of R values from a sensor |
| launchApp | A wrapper function to run the included Shiny App |
| ligandSensor-class | An S4 class to represent a 2-state ligand sensor |
| newSensorFromSpectra-function | A function to convert a sensorSpectra to a Sensor |
| pH | Finds pH, given R, Rmin, and Rmax |
| pHSensor-class | An S4 class to represent a 2-state pH sensor |
| pLigand | Finds pLigand, given R, Rmin, and Rmax |
| plotFractionMax-pHSensor-method | Plot the fraction of pH sensors in the max state |
| plotFractionMax-redoxSensor-method | Plot the fraction of redox sensors in the max state |
| plotFractionMax-Sensor-method | Plot the fraction of sensors in the max state |
| plotProperty-pHSensor-method | Plot the fraction of pH of a pHSensor |
| plotProperty-redoxSensor-method | Plot the E of a redoxSensor |
| plotProperty-Sensor-method | Plot the fraction max of a generic |
| plot_ranges_general | Takes in a ranges_df dataframe and makes a plot! |
| plot_ranges_pH | Takes in a ranges_df dataframe and makes a plot (for pH). |
| plot_ranges_pLigand | Takes in a ranges_df dataframe and makes a plot (for... |
| plot_ranges_redox | Takes in a ranges_df dataframe and makes a plot (for redox). |
| plotSpectra-sensorSpectra-method | Create a plot (ggplot object) for a sensorSpetra object |
| rangePlot-ligandSensor-method | Make a plot of the suited ranges for this ligandSensor |
| rangePlot-pHSensor-method | Make a plot of the suited ranges for this pHSensor |
| rangePlot-redoxSensor-method | Make a plot of the suited ranges for this sensor |
| ranges_df | Find the ranges df of an object |
| ranges_df-ligandSensor-method | Finds the ranges df of this ligand sensor at given... |
| ranges_df-pHSensor-method | Finds the ranges df of this pH sensor at given inaccuracies |
| ranges_df-redoxSensor-method | Finds the ranges df of this redox sensor at given... |
| redoxSensor-class | An S4 class to represent a 2-state redox sensor |
| reScaleToRange-function | A function to rescale a certain (x,y) matrix pair into a new... |
| R_of_E | What was the recorded fluorescence ratio at a certain redox... |
| R_of_pH | Finds R, given a pH |
| R_of_pLigand | Finds R, given a pLigand |
| Sensor-class | An S4 class to represent a 2-state sensor |
| sensorSpectra-class | An S4 class to represent the emission spectrum of a 2-state... |
| spectraMatrixFromValues-function | A function to make a sensorSpectra from a set of 4 vectors |
