plot_ranges_pLigand: Takes in a ranges_df dataframe and makes a plot (for...

In julianstanley/SensorOverlord: A Tyrant of Absolute Quantitative Ratiometric Microscopy

Description

Takes in a ranges_df dataframe and makes a plot (for pLigand).

Usage

plot_ranges_pLigand(ranges, ylim = c(1, 14), by = 1, ylab = "pLigand")

Arguments

ranges	A dataframe of ranges with at least these columns: 'Sensor_Name': the name of the sensor 'Minimum': the minimum pLigand measurable at the given inaccuracy 'Maximum': the maximum pLigand measurable at the given inaccuracy 'Inaccuracy': the inaccuracy associated with this row (relative) 'error_thresh': the error threshold associated with this row
ylim	The limits of the ranges plot
by	the 'by' argument of the limits axis tick marks
ylab	The label of the ranges plot

Value

A ggplot object

Examples

error_df <- create_error_df_pLigand_multiple(
  c(0.01, 0.02), 2, 10,
  data.frame(
    "Rmin" = c(1, 2),
    "Rmax" = c(5, 6),
    "delta" = c(0.2, 1.2),
    "name" = c("normal", "plusOne"),
    "pKd" = c(7, 8)
  ),
  ligand_name = "NADPH"
)
ranges_df <- create_ranges_multiple(error_df,
  parameter = "NADPH",
  thresholds = c(0.01, 0.05, 0.10, 0.15, 0.20)
)
plot_ranges_pLigand(ranges_df, ylab = "pNADPH")

julianstanley/SensorOverlord documentation built on Oct. 19, 2020, 2:29 p.m.