create_error_df_pLigand: Creates a dataframe of errors in pLigand potential at given...

In julianstanley/SensorOverlord: A Tyrant of Absolute Quantitative Ratiometric Microscopy

Description

Creates a dataframe of errors in pLigand potential at given inaccuracies

Usage

create_error_df_pLigand(
  inaccuracies,
  pLigand_min,
  pLigand_max,
  Rmin,
  Rmax,
  delta,
  pKd,
  by = 0.01,
  ligand_name = "ligand"
)

Arguments

inaccuracies	A vector of inaccuracies (e.g. 0.02 for 2% error), always relative
pLigand_min	The minimum pLigand for which to record error
pLigand_max	The maximum pLigand for which to record error
Rmin	the minimum possible ratiometric fluorescence
Rmax	the maximum possible ratiometric fluorescence
delta	the ratiometric fluorescence in the first wavelength
pKd	the sensor's midpoint/pKd
by	(optional, default: 0.01) The granularity of the error table–e.g., by = 0.01 would record 275 and 275.01, etc.
ligand_name	The name of this ligand

Value

A dataframe of errors with columns: 'pLigand': the pLigand, 'Error': the error in this pLigand 'Inaccuracy': The inaccuracy of the measurements (relative to R).

Examples

create_error_df_pLigand(c(0.01, 0.02), 2, 10, 1, 5, 0.2, 7,
  ligand_name = "NADPH"
)

julianstanley/SensorOverlord documentation built on Oct. 19, 2020, 2:29 p.m.