formatSpectraData: Formats sensor information into a dataframe suitable for...

In julianstanley/SensorOverlord: A Tyrant of Absolute Quantitative Ratiometric Microscopy

Description

Formats sensor information into a dataframe suitable for input into database

Usage

formatSpectraData(
  name,
  type,
  readout,
  lambda_max,
  values_max,
  lambda_min,
  values_min,
  sensor_midpoint,
  lambda1_recommended,
  lambda2_recommended
)

Arguments

name	Character string. The name of the sensor
type	The type of sensor. One of: redox, pH, pLigand
readout	The readout of the sensor. One of: exitation ratiometric, emission ratiometric
lambda_max	The lambda values corresponding to the emission in the maximum state (corresponding to Rmax)
values_max	The emission values in the maximum state (corresponding to Rmax–so, deprotenated or oxidized or not bound to ligand)
lambda_min	The lambda values corresponding to the emission in the minimum state (corresponding to Rmin)
values_min	The emission values in the minimum state (corresponding to Rmin–so, protenated or reduced or bound to ligand)
sensor_midpoint	Numeric. The midpoint of the sensor. Depending on your sensor, this could be: e0, pKa, log-midpoint

Value

A list object suitable to be pushed to the mongo database

julianstanley/SensorOverlord documentation built on Oct. 19, 2020, 2:29 p.m.