API for juliendelile/Antler
ANother Transcriptome Lineage ExploreR
| Global functions | |
|---|---|
| .onLoad | Source code |
| Antler | Man page |
| Antler-class | Man page |
| add_color_map | Man page |
| aggregateRMSTs_LowMemory | Source code |
| brew_more_colors | Man page Source code |
| build_pseudotime_tree | Man page |
| carve | Man page |
| cell_clusters_identify | Man page |
| cell_names | Man page |
| cell_state_graph_plot | Man page |
| clean_memory | Source code |
| clusterGenes | Source code |
| colorize | Source code |
| compareEuclideanDistSpeed | Source code |
| constraints_approxSumTo1 | Source code |
| convert_ensembl_id_to_name | Man page |
| define_cell_samples | Man page |
| dispersed_genes | Man page |
| elbow_pos_area_heuristic | Source code |
| elbow_pos_piecewise_heuristic | Source code |
| exclude_exotic_genes | Man page |
| exclude_unexpressed_genes | Man page |
| export_expressionset | Man page |
| export_graph_as_gexf | Source code |
| fastCor | Source code |
| fastEuclideanDist | Source code |
| fdate | Source code |
| gene_modules_export | Man page |
| gene_modules_identify | Man page |
| gene_modules_report_genes | Man page |
| gene_modules_select_from_gene_names | Man page |
| gene_modules_select_from_ids | Man page |
| gene_names | Man page |
| generate_sample_hsv_map | Source code |
| genes_from_GOterms | Man page Source code |
| geo_mean | Source code |
| getCorThreshold | Source code |
| getDistortion | Source code |
| getGraphAverage | Source code |
| getMagicAffinity | Source code |
| getMagicAffinity_v2 | Source code |
| getMagicDiffusionData | Source code |
| getPTstructures | Source code |
| getRandomMST_edge_based | Source code |
| get_color_matrix | Source code |
| get_communities_from_graph | Source code |
| get_graph_from_adjacency_matrix | Source code |
| get_kNN_adjacency_matrix | Source code |
| get_optimal_cluster_number | Source code |
| get_rMST_adjacency_matrix_edge_based | Source code |
| load_dataset | Man page |
| make_all_loop_plots | Source code |
| make_init_plots | Source code |
| newClusterWeightedDistance | Source code |
| newScoreFunctionWeightedDistance | Source code |
| normalize | Man page |
| normalize_feature_values | Source code |
| numCorGenes | Source code |
| num_cells | Man page |
| num_genes | Man page |
| plotColorGraph2 | Source code |
| plotGeneGraph | Source code |
| plot_QC | Man page |
| plot_color_graph | Source code |
| plot_compact_data | Source code |
| plot_pseudotime_dynamics | Man page |
| plot_transcriptome_summary | Man page |
| quantile_mean | Source code |
| read_counts | Man page |
| remove_cells | Man page |
| remove_clusters | Man page |
| remove_genes | Man page |
| remove_outliers | Man page |
| report | Man page |
| sample_size | Man page |
| save_dataset | Man page |
| selectModulesByConsistency | Source code |
| selectModulesByLevelInPositiveCells | Source code |
| selectModulesByOrderingCorrelation | Source code |
| selectModulesByPositiveCellRange | Source code |
| selectModulesBySkewness | Source code |
| select_dispersed_genes | Man page |
| set_favorite_genes | Man page |
| seurat_dispersion_zscore | Source code |
| silent.binarize.array | Source code |
| smooth | Man page |
| testFastCor | Source code |
| test_kernel_widths | Man page |
| which_pareto_efficient | Source code |
