View source: R/utils_functions.R
This function download or load Genes/GO terms association maps from BioMart.
1 2 3 4 5 6 | genes_from_GOterms(
go_ids,
biomart_dataset = "mmusculus_gene_ensembl",
gofilename = system.file("extdata", "Annotations/gene_goterms.txt", package =
"Antler")
)
|
go_ids |
a character vector containing the GO terms to convert. Each term must be written with the 'GO:' prefix, e.g. 'GO:0007399'. |
biomart_dataset |
a character string specifying the BioMart dataset to use for the conversion. The list of available datasets can be listed with |
gofilename |
character string. The file path of a csv file contining a mapping between gene names (first column) and GO terms (second column). If NA, the mapping is downloaded from ensembl's bioMart. |
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