plot_pseudotime_dynamics: Visualize the smoothed gene expression dynamics along...

In juliendelile/Antler: ANother Transcriptome Lineage ExploreR

Description

Visualize the smoothed gene expression dynamics along specific branches of the pseudotime tree.

Arguments

gene_list	character vector. The names of the genes to render.
leaf_ids	integer vector. Specifies the indices of the differentiation trajectories to visualize. If NULL (default), all the trajectories are rendered.
title	character string. The title of the plot. Default to the rendered gene names.
subtitle	character string. The subtitle of the plot. Default to NULL.
data_status	character string. Specifies whether the gene expression levels to be rendered are raw ("Raw"), normalized ("Normalized") or have been imputed ("Smoothed"). Default to "Smoothed".
show_cells	logical. Whether to show the gene expression levels for each individual cells. Default to FALSE.
basename	character string. The name of the output file, without extension.

juliendelile/Antler documentation built on June 19, 2021, 9 a.m.