calc.conservation: Calculate position-wise conservation from a Uniprot accession

View source: R/orthologs.R

calc.conservationR Documentation

Calculate position-wise conservation from a Uniprot accession

Description

Retrieves the 90 calculate a multiple sequence alignment and uses the AMAS algorithm to derive the position-wise sequence conservation. If the given accession has been used as an input before, a cached sequence alignment will be used instead.

Usage

calc.conservation(acc, overrideCache = FALSE)

Arguments

acc

the Uniprot accession

Value

a numerical vector with the position-wise conservation.


jweile/mavevis documentation built on Oct. 30, 2023, 7:16 a.m.