calc.conservation: Calculate position-wise conservation from a Uniprot accession
In jweile/mavevis: Visualization for MaveDB
calc.conservation R Documentation
Calculate position-wise conservation from a Uniprot accession
Description
Retrieves the 90
calculate a multiple sequence alignment and uses the AMAS algorithm to
derive the position-wise sequence conservation. If the given accession
has been used as an input before, a cached sequence alignment will be
used instead.
Usage
calc.conservation(acc, overrideCache = FALSE)
Arguments
acc
the Uniprot accession
Value
a numerical vector with the position-wise conservation.
jweile/mavevis documentation built on Oct. 30, 2023, 7:16 a.m.
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| calc.conservation | R Documentation |
Calculate position-wise conservation from a Uniprot accession
Description
Retrieves the 90 calculate a multiple sequence alignment and uses the AMAS algorithm to derive the position-wise sequence conservation. If the given accession has been used as an input before, a cached sequence alignment will be used instead.
Usage
calc.conservation(acc, overrideCache = FALSE)
Arguments
acc |
the Uniprot accession |
Value
a numerical vector with the position-wise conservation.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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