new.amasLite: Calculate AMAS conservation
In jweile/mavevis: Visualization for MaveDB
new.amasLite R Documentation
Calculate AMAS conservation
Description
Uses the AMAS method (Livingstone & Barton 1993) method to calculate position-wise
conservation from a protein multiple sequence alignment. Creates an object of type
amasLite, which features a single method: run(alignmentFile).
Usage
new.amasLite()
Details
The run(alignmentFile) method takes the name of a file as its parameter.
The file must be a FASTA formatted multiple sequence alignment. The method returns
a numerical vector listing the position-wise conservation with respect to the first
entry in the alignment.
Value
an object of type amasLite
jweile/mavevis documentation built on Oct. 30, 2023, 7:16 a.m.
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| new.amasLite | R Documentation |
Calculate AMAS conservation
Description
Uses the AMAS method (Livingstone & Barton 1993) method to calculate position-wise
conservation from a protein multiple sequence alignment. Creates an object of type
amasLite, which features a single method: run(alignmentFile).
Usage
new.amasLite()
Details
The run(alignmentFile) method takes the name of a file as its parameter.
The file must be a FASTA formatted multiple sequence alignment. The method returns
a numerical vector listing the position-wise conservation with respect to the first
entry in the alignment.
Value
an object of type amasLite
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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