fetch.domains.pfam: Find Pfam domains for a Uniprot accession

In jweile/mavevis: Visualization for MaveDB

Find Pfam domains for a Uniprot accession

Description

Finds Pfam domains belonging to the given Uniprot accession. Checks for a local cache file of previous results. If such a cache exists, the pre-calculated results will be returned, otherwise queries to Uniprot and PDB will be made.

Usage

fetch.domains.pfam(acc)

Arguments

acc	the Uniprot accession

Value

a data.frame with the following columns:

• type: the type of domain or feature (SIGNAL, DOMAIN, or REPEAT)

• method: the experimental method for this structure, e.g NMR, X-ray or Model

• name: the name of the domain or feature

• start: the start amino acid position

• end: the end amino acid position

jweile/mavevis documentation built on Oct. 30, 2023, 7:16 a.m.