query.alphafold: Query Alphafold

In jweile/mavevis: Visualization for MaveDB

Query Alphafold

Description

Queries the EMBL Alphafold database for predicted protein structure data for a given database accession and writes the result to file

Usage

query.alphafold(uniprot.acc, pdb.file = paste0(uniprot.acc, "_af.pdb"))

Arguments

uniprot.acc	the Uniprot accession to query
pdb.file	the name of the file to which the output will be written.

Value

the name of the output file.

Examples

## Not run: 
#with a pre-determined output file
outfile <- "sumo_conjugase_structure.pdb"
query.pdb("3UIP",outfile)

#with an autogenerated output file
outfile <- query.pdb("3UIP")

## End(Not run)

jweile/mavevis documentation built on Oct. 30, 2023, 7:16 a.m.