Files in jysonganan/methylDeConv
Computational pipeline for deconvolution of methylation data.
.Rbuildignore
.Rhistory
.gitignore
DESCRIPTION
GoogleColab_demos/demo_1.ipynb
MethylCIBERSORT_analysis.ipynb
NAMESPACE
R/MixtureSimulation.R
R/buildReference.R
R/deconvAlgorithms.R
R/pipeline.R
R/refCompTableProbeSelection.R
README.md
heatmap_tSNE_visualization.ipynb
man/CBS.Rd
man/GaussianSim_mixtureProfiles.Rd
man/Houseman_project.Rd
man/MethylDeconv_pipeline.Rd
man/MethylResolver.Rd
man/RPC.Rd
man/betaSim_mixtureProfiles.Rd
man/betaSim_purifiedProfiles.Rd
man/build_reference_450k.Rd
man/build_reference_450k_neuron.Rd
man/build_reference_EPIC.Rd
man/build_reference_EPIC_neuron.Rd
man/enrichment_score.Rd
man/gaussianSim_purifiedProfiles.Rd
man/ref_compTable.Rd
man/ref_probe_selection_HighVar.Rd
man/ref_probe_selection_multiclassGlmnet_cv.Rd
man/ref_probe_selection_multiclassRF_cv.Rd
man/ref_probe_selection_oneVsAllLimma.Rd
man/ref_probe_selection_oneVsAllttest.Rd
man/ref_probe_selection_pairwiseGlmnet_cv.Rd
man/ref_probe_selection_pairwiseLimma.Rd
man/ref_probe_selection_twoStage.Rd
man/up_probes_oneVsAllttest_celltype.Rd
methylDeConv.Rproj
methylDeConv_0.1.1.pdf
supplementary_code/450kEPICprobes.R
supplementary_code/Additional_feature_selection.R
supplementary_code/Additional_methods_ARIC.R
supplementary_code/Additional_methods_TOAST.R
supplementary_code/Metrics.R
supplementary_code/Simulation_BetaMixture.R
supplementary_code/Simulation_GaussianMixture.R
supplementary_code/StabilityAnalysisRefSize.R
supplementary_code/featureSelection_Comparison.R
supplementary_code/featureSelection_Comparison_varyTopProbes.R
supplementary_code/plots.R
supplementary_code/plots_2.R
supplementary_code/probes_enrichment_analysis.R
supplementary_code/update_plots.R
