ref_probe_selection_oneVsAllttest: One-vs-All t test feature selection

View source: R/refCompTableProbeSelection.R

ref_probe_selection_oneVsAllttestR Documentation

One-vs-All t test feature selection

Description

The One-vs-All t test feature selection based on the reference matrix.

Usage

ref_probe_selection_oneVsAllttest(
  ref_betamatrix,
  ref_phenotype,
  probeSelect = "both",
  pv = 1e-08,
  MaxDMRs = 100
)

Arguments

ref_betamatrix

The reference matrix ref_betamatrix.

ref_phenotype

The cell type information for the reference matrix.

probeSelect

The selection can be "any" or "both". If "any", the function selects top probes regardless of up-regulation or down-regulation. If "both", half of top probes are picked up from the up-regulated probes while the other half of the top probes are picked up from the down-regulated probes. Default value is "both".

pv

The p-value threshold with default value as 1e-8

MaxDMRs

The number of probes selected with default value as 100.

Value

A vector of the selected probes.


jysonganan/methylDeConv documentation built on Aug. 8, 2022, 6:25 a.m.