View source: R/refCompTableProbeSelection.R
ref_probe_selection_oneVsAllttest | R Documentation |
The One-vs-All t test feature selection based on the reference matrix.
ref_probe_selection_oneVsAllttest( ref_betamatrix, ref_phenotype, probeSelect = "both", pv = 1e-08, MaxDMRs = 100 )
ref_betamatrix |
The reference matrix ref_betamatrix. |
ref_phenotype |
The cell type information for the reference matrix. |
probeSelect |
The selection can be "any" or "both". If "any", the function selects top probes regardless of up-regulation or down-regulation. If "both", half of top probes are picked up from the up-regulated probes while the other half of the top probes are picked up from the down-regulated probes. Default value is "both". |
pv |
The p-value threshold with default value as 1e-8 |
MaxDMRs |
The number of probes selected with default value as 100. |
A vector of the selected probes.
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