README.md

In jysonganan/methylDeConv: Computational pipeline for deconvolution of methylation data.

methylDeConv

R package methylDeConv: A Computational Deconvolution Pipeline for Methylation data

Install

In R session:

devtools::install_github("jysonganan/methylDeConv")

Demo

Check the Google Colab Demos :point_right: here.

Manual

The details, parameter setting and output format for each function are included in the R package manual :point_right: here

References

EpiDISH https://www.bioconductor.org/packages/release/bioc/html/EpiDISH.html

MethylCIBERSORT https://zenodo.org/record/1284582#.YMZlUpNKjBI

MethylResolver https://github.com/darneson/MethylResolver

xCell https://github.com/dviraran/xCell

minfi https://github.com/hansenlab/minfi/blob/master/R/estimateCellCounts.R

jysonganan/methylDeConv documentation built on Aug. 8, 2022, 6:25 a.m.