Man pages for jysonganan/methylDeConv
Computational pipeline for deconvolution of methylation data.
| betaSim_mixtureProfiles | Beta Mixture Simulation |
| betaSim_purifiedProfiles | Purified profiles sampling in Beta Mixture Simulation. |
| build_reference_450k | Build the reference library for 450k arrays |
| build_reference_450k_neuron | Build the reference library for 450k arrays of brain tissue |
| build_reference_EPIC | Build the reference library for EPIC arrays |
| build_reference_EPIC_neuron | Build the reference library for EPIC arrays of brain tissue |
| CBS | CBS algorithm |
| enrichment_score | Enrichment score-based algorithm |
| GaussianSim_mixtureProfiles | Gaussian Mixture Simulation |
| gaussianSim_purifiedProfiles | Purified profiles sampling in Gaussian Mixture Simulation. |
| Houseman_project | Houseman algorithm |
| MethylDeconv_pipeline | Deconvolution Pipeline |
| MethylResolver | MethylResolver algorithm |
| ref_compTable | Average reference profiles over each cell type |
| ref_probe_selection_HighVar | Feature selection based on variability |
| ref_probe_selection_multiclassGlmnet_cv | Multi-class elastic net modeling feature selection |
| ref_probe_selection_multiclassRF_cv | Multi-class RF modeling feature selection |
| ref_probe_selection_oneVsAllLimma | One-vs-All moderated t test feature selection |
| ref_probe_selection_oneVsAllttest | One-vs-All t test feature selection |
| ref_probe_selection_pairwiseGlmnet_cv | Pairwise elastic net modeling feature selection |
| ref_probe_selection_pairwiseLimma | Pairwise moderated t test feature selection |
| ref_probe_selection_twoStage | Two-stage feature selection |
| RPC | RPC algorithm |
| up_probes_oneVsAllttest_celltype | One-vs-All t test feature selection (up-regulated) |
