plot_panel_anno: Create annotation panel

In k-hench/GenomicOriginsScripts: Provides the R scripts for the paper "Ancestral variation, hybridization and modularity fuel a marine radiation"

Description

plot_panel_anno plots the gene models of a selected outlier window

Usage

plot_panel_anno(outlier_id, label, lg, start, end, genes = c(), ...)

Arguments

outlier_id	string, identifier of fst outlier ID (eg "LG04_1")
label	string, panel label ("A"/"B"/"C")
lg	string, linkage group (eg. "LG08")
start	numeric, start position of window (bp)
end	numeric, end position of window (bp)
genes	vector of strings, genes that receive a label
...	catch-all parameter to allow excessive parameters through purrr::pmap

Details

The overal column title is created and the annotation data is plotted.

See Also

Other Figure 5: ax_scl(), cross_spec(), custom_annoplot(), dist_tibble(), distances_tree(), get_clr(), get_dist(), get_gxp_long(), get_isolated_topos(), get_neighbour_topos(), is_isolated(), min_dist(), no_title(), plot_curtain(), plot_fish_zoom(), plot_fst_poptree(), plot_leg(), plot_panel_delta_dxy(), plot_panel_dxy(), plot_panel_fst(), plot_panel_gxp(), plot_panel_twisst(), prep_data(), theme_panels()

k-hench/GenomicOriginsScripts documentation built on July 24, 2021, 3:05 p.m.