API for kathrynrozengagnon/CLIPflexR
CLIP tools and wrappers in R

Global functions
.onAttach	Source code
CLIP_align	Man page Source code
CLIP_buildIDX	Man page Source code
CLIP_bw2	Man page Source code
annotatePeaksWithPatterns	Man page Source code
bamtobed	Man page Source code
bowtie2_index	Man page Source code
bowtie_align	Man page Source code
bzip2	Man page Source code
chimeraProcess	Source code
chimera_Process	Man page Source code
compress	Man page Source code
countFromBed	Man page Source code
ctk_bed2rgb	Man page Source code
ctk_cims	Man page Source code
ctk_cits	Man page Source code
ctk_fastq2collapse	Man page Source code
ctk_fastqFilter	Man page Source code
ctk_getMutationType	Man page Source code
ctk_joinWrapper	Man page Source code
ctk_parseAlignment	Man page Source code
ctk_stripBarcode	Man page Source code
ctk_tag2collapse	Man page Source code
ctk_tag2peak	Man page Source code
ctk_tag2profile	Man page Source code
decompress	Man page Source code
extract_unmapped	Man page Source code
fastq_quality_filter	Man page Source code
fastq_quality_trimmer	Man page Source code
fastq_to_fasta	Man page
fastx_barcode_splitter	Man page Source code
fastx_clipper	Man page Source code
fastx_collapser	Man page Source code
fastx_qtoa	Man page Source code
fastx_quality_stats	Man page Source code
fastx_trimmer	Man page Source code
fetchSequencesForCLIP	Man page Source code
homer_peaks	Man page Source code
install_ctk	Man page Source code
ranges_count	Man page Source code
readinpeaks	Source code
reformat	Source code
revmap_count	Man page Source code
revmap_process	Man page Source code