bzip2: Wrapper function for bzip2

In kathrynrozengagnon/CLIPflexR: CLIP tools and wrappers in R

Wrapper function for bzip2

Description

Wrapper function for bzip2

Usage

bzip2(
  fileToBzip2,
  bzip2 = "Bzip2",
  keep = TRUE,
  force = FALSE,
  small = FALSE,
  blockSize = 1,
  stderr = file.path(dirname(fileToBzip2), paste0(basename(fileToBzip2),
    "_Bzip2_stderr.txt")),
  stdout = file.path(dirname(fileToBzip2), paste0(basename(fileToBzip2),
    "_Bzip2_stdout.txt")),
  useClipRConda = ifelse(is.null(getOption("CLIPflexR.condaEnv")), FALSE, TRUE),
  additional_Args = NULL,
  verbose = FALSE
)

Arguments

fileToBzip2	path to file to bzip.
bzip2	path to bzip2.
keep	keep (don't delete) input files, TRUE (default) or FALSE.
force	overwrite existing output files.
small	use less memory (at most 2500k).
blockSize	set block size to 100k .. 900k.
stderr	path to stderr file.
stdout	path to stdout file.
useClipRConda	use conda environment installed by Herper, TRUE (default) or FALSE.
additional_Args	additional arguments to be passed to system call.
verbose	print messages to screen, TRUE or FALSE (default).

Value

path to bzipped file.

Author(s)

Kathryn Rozen-Gagnon

kathrynrozengagnon/CLIPflexR documentation built on Dec. 8, 2022, 7:31 p.m.