bowtie2_index: Make index for Rbowtie2
In kathrynrozengagnon/CLIPflexR: CLIP tools and wrappers in R
bowtie2_index R Documentation
Make index for Rbowtie2
Description
Make index for Rbowtie2
Usage
bowtie2_index(
genomeFasta,
outIndex = gsub("\\.fa|\\.fasta|\\.fna", "", genomeFasta),
overwrite = F,
threads = 1
)
Arguments
genomeFasta
path to file to process.
outIndex
path to output index.
overwrite
overwrite existing output files, TRUE or FALSE (default).
threads
number of threads to use, default is 1.
Value
Path to index
Author(s)
Kathryn Rozen-Gagnon
Examples
testFasta <- system.file("extdata/hg19Small.fa",package="CLIPflexR")
myIndex <-suppressWarnings(bowtie2_index(testFasta, overwrite = TRUE))
kathrynrozengagnon/CLIPflexR documentation built on Dec. 8, 2022, 7:31 p.m.
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| bowtie2_index | R Documentation |
Make index for Rbowtie2
Description
Make index for Rbowtie2
Usage
bowtie2_index(
genomeFasta,
outIndex = gsub("\\.fa|\\.fasta|\\.fna", "", genomeFasta),
overwrite = F,
threads = 1
)
Arguments
genomeFasta |
path to file to process. |
outIndex |
path to output index. |
overwrite |
overwrite existing output files, TRUE or FALSE (default). |
threads |
number of threads to use, default is 1. |
Value
Path to index
Author(s)
Kathryn Rozen-Gagnon
Examples
testFasta <- system.file("extdata/hg19Small.fa",package="CLIPflexR")
myIndex <-suppressWarnings(bowtie2_index(testFasta, overwrite = TRUE))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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