Man pages for kbolab/moddicom
Package for handling DICOM RT files
| computeFeatures.geoLet | computeFeatures.geoLet lavora su piu |
| DR.Bentzen | Function that calculates TCP according Bentzen (log Poisson)... |
| DR.fit | Fit a Dose/Response function |
| DR.fit.DoseVolume | Function for fitting Vdose and Dvolume to a given 'dvhmatrix'... |
| DR.generate | Function for generating a series of outcomes related to a... |
| DR.Goitein | Function that calculates NTCP according Goitein (Bentzen)... |
| DR.Lyman | Function that calculates NTCP according Lyman/Kutcher/Burman... |
| DR.Munro | Function that calculates TCP according Munro/Gilbert/Kallman... |
| DR.Niemierko | Function that calculates (N)TCP according Niemierko model |
| DR.Okunieff | Function that calculates TCP according Okunieff model |
| DR.Warkentin | Function that calculates TCP according Warkentin (Poisson)... |
| DVH.absolute | Converts relative 'dvhmatrix' class objects to absolute |
| DVH.baseStat | Function for calculating the mean and median dvh with related... |
| DVH.cum.to.diff | Function that converts cumulative DVHs into differential ones |
| DVH.diff.to.cum | Function that converts differential DVHs into cumulative ones |
| DVH.Dvolume | Function for extracting the D-Volume from cumulative DVH(s) |
| DVH.eud | Calculates Equivalent Uniform Dose for a 'dvhmatrix' object |
| DVH.extract | Extracts a DVH from a vector of dose bins |
| DVH.generate | Function that creates a 'dvhmatrix' class object |
| DVH.lq.correct | Function that returns the linear quadratic correction of dose... |
| dvhmatrix-class | dvmmatrix S4 class |
| DVH.mean | mean of DVHs |
| DVH.merge | Merge two different 'dvhmatrix' class objects into one |
| DVH.relative | Converts absolute 'dvhmatrix' class objects to relative |
| DVH.Vdose | Function for extracting the V-Dose from cumulative DVH(s) |
| f.extractor.pluri.LoG.par | Function extractor for multiple filter parameter |
| f.extractor.sing.par | Function extractor for single filter parameter |
| FIL.2D.conv.Filter | a new kind of filtering |
| FIL.2D.conv.Filter.geoLet | a new kind of filtering able to work on geoLet objects |
| FIL.2D.conv.Filter.voxelVolumes | a new kind of filtering able to work on geoLet objects |
| FIL.applyFilter | Apply a filter to a 2d or a 3d array wow |
| FIL.applyFilterToStudy | DEPRECATED!!!!: Apply a filter to mmButo object |
| FIL.getFilteredVoxelCube | Return a filtered VoxelCube |
| fractal.Extr.threshold | Fractal features extractor from a folder based on threshold... |
| fractalFeatures | Fractal features |
| geoLet | class for loading and presenting DICOM data |
| geoNIFTI | class for loading and presenting NIFTI data |
| GLT.calculateDVHs | Returns the DVH calculated from data stored into a geoLet... |
| GLT.getDoseROIVoxels | Returns the dose voxels internal to a specified ROI |
| GLT.getImageROIVoxels | Returns the image voxels internal to a specified ROI |
| GLT.getImageVoxelCube | Returns an IMAGE voxel cube |
| GLT.getPixelSpacing | Returns the pixelSpacing along three axes of a geoLet DICOM... |
| GLT.getROIList | Returns the list of the ROI available in a geoLet object |
| GLT.getTag | Returns the value of a tag of a specified DICOM object |
| GLT.openDICOMFolder | Load a DICOM serie into a geoLet object |
| GLT.rotateToAlign | Remap the ROI points according to the raster geomery of image |
| logHandler | class for handling logs/warnings/errorss |
| map.ROI | map.ROI |
| MBT.getAllPixelSpacing | Retrieve the pixelSpacing values of the stored series |
| MBT.getImageVoxel | Retrieve the imageVoxelCube of the main images |
| MBT.getROIVoxel | Returns the lists of voxels internal to a given ROIName |
| MBT.loadCollection | Load a set of DICOM studies into a mmButo structure |
| mmButo | class for loading multiple sets of DICOM studies from... |
| Normer | badali'3 |
| NormerObj | Funzione 3 |
| plot2D.Slice | function for plotting a series of slices containing (or not)... |
| plot-DoseVolumeModel-ANY-method | method for plotting the Log-Likelihood values in... |
| plot-dvhmatrix-ANY-method | method for plotting 'dvhmatrix' class objects |
| print.ROImap | print.ROImap |
| RAD.areaVolume | function to calculate Are/Volume and related measures |
| RAD.ExtractFeatures | Extract a set of features |
| RAD.firstOrderFeatureImage | function to calculate the first order features |
| RAD.getFeaturesListNames | Return the list of the available features |
| radiomics | class for doing Radiomics |
| RAD.scoutNIFTI | class for loading and presenting DICOM data |
| RAD.scoutV2 | class for loading and presenting DICOM data |
| Select | Filter to select a particular subpopulation in the structure |
| services | service class |
| Setup_For_Keras | Setup geoLet derived objects for deep learning analysis |
| StructureSurface | Mesh surface |
| StructureVolume | Mesh volume and surface |
| summary.ROImap | summary.ROImap |
| ThresholderObj | Funzione 2 |
| viewer | class for viewing |
| writeLog | Write an external file |
