Description Usage Arguments Examples
View source: R/geoletFeatures.R
It extracts the feature values by applying the filter at multiple LoG sigma.
1 2 3 4 5 6 | f.extractor.pluri.LoG.par(path, ROIName, feature.family = c("stat",
"morph", "glcm", "rlm", "szm"), interpolate = FALSE, px = "",
py = "", threshold = 0.1, discretize = "", bin.size = 25,
bin.number = 25, fileName = "tmp.f.extractor.pluri.par.RData",
forceRecalculus = TRUE, from.sigma = from.sigma,
to.sigma = to.sigma, def.by = def.by, strategy = "fixed")
|
path |
The path to be browsed for folders containing DICOM images and Structure Set of patients |
ROIName |
A |
feature.family |
The list of features to be extracted, by default all. The possible families are: statistical, grey level co-occurrence matrix, run-length matrix, size-zone matrix and fractal |
interpolate |
A |
px |
The pixel spacing in x direction as string for interpolating sigma, by default empty. |
py |
The pixel spacing in y direction as string for interpolating sigma, by default empty. |
threshold |
A |
discretize |
ROI discretization for feature extractions, by default |
bin.size |
Size of bin for ROI discretization for feature extractions, by default 25. |
bin.number |
Number of bin for ROI discretization for feature extractions, by default 25. |
fileName |
The Rdata file name saved locally during the running, by default 'tmp.f.extractor.sing.par.RData'. |
forceRecalculus |
A |
from.sigma |
The first sigma to be analyzed |
to.sigma |
The last sigma to be analyzed |
def.by |
The sigma step to be analyzed |
strategy |
The strategy to be applied for the radiomics analysis, by default "fixed". For now no other strategy have been implemented. |
1 2 3 4 | ## Not run:
f.extractor.pluri.LoG.par(path = './RadiomicsFolder', ROIName = 'GTV', feature.family = c('stat', 'glcm'), forceRecalculus = T, from.sigma = 0.3, to.sigma = 2, def.by = 0.1)
## End(Not run)
|
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