f.extractor.pluri.LoG.par: Function extractor for multiple filter parameter

Description Usage Arguments Examples

View source: R/geoletFeatures.R

Description

It extracts the feature values by applying the filter at multiple LoG sigma.

Usage

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f.extractor.pluri.LoG.par(path, ROIName, feature.family = c("stat",
  "morph", "glcm", "rlm", "szm"), interpolate = FALSE, px = "",
  py = "", threshold = 0.1, discretize = "", bin.size = 25,
  bin.number = 25, fileName = "tmp.f.extractor.pluri.par.RData",
  forceRecalculus = TRUE, from.sigma = from.sigma,
  to.sigma = to.sigma, def.by = def.by, strategy = "fixed")

Arguments

path

The path to be browsed for folders containing DICOM images and Structure Set of patients

ROIName

A character object containing the name(s) (as vector) of ROIs to be analyzed. If there is more than one ROI (multiple references) or no ROI is listed the analysis is stopped

feature.family

The list of features to be extracted, by default all. The possible families are: statistical, grey level co-occurrence matrix, run-length matrix, size-zone matrix and fractal

interpolate

A logical value, by default FALSE, for interpolating sigma values in filters using sigma for computation as LoG

px

The pixel spacing in x direction as string for interpolating sigma, by default empty.

py

The pixel spacing in y direction as string for interpolating sigma, by default empty.

threshold

A numeric value setting the threshold for applying the interpolation, by default .001

discretize

ROI discretization for feature extractions, by default none. The possible values are fixed.bin.size and fixed.bin.number.

bin.size

Size of bin for ROI discretization for feature extractions, by default 25.

bin.number

Number of bin for ROI discretization for feature extractions, by default 25.

fileName

The Rdata file name saved locally during the running, by default 'tmp.f.extractor.sing.par.RData'.

forceRecalculus

A logical value, by defaul TRUE, for forcing recalculus by deleting all the local Rdata previously created.

from.sigma

The first sigma to be analyzed

to.sigma

The last sigma to be analyzed

def.by

The sigma step to be analyzed

strategy

The strategy to be applied for the radiomics analysis, by default "fixed". For now no other strategy have been implemented.

Examples

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## Not run: 
f.extractor.pluri.LoG.par(path = './RadiomicsFolder', ROIName = 'GTV', feature.family = c('stat', 'glcm'), forceRecalculus = T, from.sigma = 0.3, to.sigma = 2, def.by = 0.1)

## End(Not run)

kbolab/moddicom documentation built on Nov. 29, 2020, 9:11 p.m.