View source: R/autoanalysis4Clustering.R
autoencoderAnalysis4Clustering | R Documentation |
This function Compress data using autoencoder partially connected
autoencoderAnalysis4Clustering(
group = c("sudo", "docker"),
scratch.folder,
file,
separator,
projectName,
seed = 1111,
Sp
)
group |
a character string. Two options: sudo or docker, depending to which group the user belongs |
scratch.folder |
a character string indicating the path of the scratch folder |
file |
a character string indicating the path of the file, with file name and extension included.Has to be the one in the projectName folder.Different so from the previous one. |
separator |
separator used in count file, e.g. '\t', ',' |
projectName |
might be different from the matrixname in order to perform different analysis on the same dataset |
seed |
important value to reproduce the same results with same input |
Sp |
minimun number of percentage of cells that has to be in common between two permutation to be the same cluster. |
Luca Alessandri, alessandri [dot] luca1991 [at] gmail [dot] com, University of Torino
## Not run:
autoencoderAnalysis4Clustering(group=group, scratch.folder=scratch.folder, file=file2,separator=separator,projectName=projectName2,seed=seed,Sp=Sp)
## End(Not run)
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