clusterReorg | R Documentation |
This function executes a ubuntu docker that merge two clusters
clusterReorg(
group = c("sudo", "docker"),
scratch.folder,
file,
nCluster,
A,
B,
separator,
sp = 0.8
)
group |
a character string. Two options: sudo or docker, depending to which group the user belongs |
scratch.folder |
a character string indicating the path of the scratch folder |
file |
a character string indicating the path of the file, with file name and extension included |
nCluster |
number of Cluster used in Kmeans to generate the clusters that you want to merge |
A |
first Cluster that has to be merged |
B |
second Cluster that has to be merged |
separator |
separator used in count file, e.g. '\t', ',' |
sp |
minimun number of percentage of cells that has to be in common between two permutation to be the same cluster. |
will change all the files generated from permAnalysis algorithm in a new folder matrixName_Cluster_merged/
Luca Alessandri , alessandri [dot] luca1991 [at] gmail [dot] com, University of Torino
## Not run:
clusterReorg("docker","/home/lucastormreig/CASC2.0/2.1_clusterReorg/scratch/","/home/lucastormreig/CASC2.0/2.1_clusterReorg/Data/TOTAL.csv",3,1,3,",")#
## End(Not run)
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