bulkClusters: bulkClusters

In kendomaniac/rCASC: rCASC reproducible Classification Analysis of Single Cell Sequencing Data

bulkClusters

Description

The present function create pseudo-bulk matrix from clustering.output file. The output are three files: _bulklog2, which is not normalized, _bulkColumn, which is z-scoere calculated over each column, _bulkRow, which is z-score calculated over each row

Usage

bulkClusters(group = c("sudo", "docker"), scratch.folder, file, separator, cl)

Arguments

group	a character string. Two options: sudo or docker, depending to which group the user belongs
scratch.folder	a character string indicating the path of the scratch folder
file	a character string indicating the path of the file, with file name and extension included
separator	matrix separator, ',', '\t'
cl	name and path of the file clustering.output previously generated from clustering algorithm from rcasc

Author(s)

Luca Alessandri, alessandri [dot] luca1991 [at] gmail [dot] com, University of Torino

Examples

## Not run: 
 bulkClusters(group="docker", scratch.folder="/home/user/scratch", 
 file="/home/user/temp/setA.csv",separator=",",
 cl="/home/user/temp/Results/setA/3/setA_clustering.output.csv")
 

## End(Not run)

kendomaniac/rCASC documentation built on June 10, 2025, 2:52 a.m.