genesUmi: Plotting genes to UMIs relationship.

In kendomaniac/rCASC: rCASC reproducible Classification Analysis of Single Cell Sequencing Data

Plotting genes to UMIs relationship.

Description

This function create a plot in which genes are plotted with respect to total counts UMI for each cell.

Usage

genesUmi(file, umiXgene = 3, sep)

Arguments

file	a character string indicating the path of the file tab delimited of cells un-normalized expression counts.
umiXgene	a integer defining how many UMI are required to call a gene as present. default: 3
sep	separator used in count file, e.g. '\t', ','

Value

pdf with the cells counts distributions: genes.umi.pdf

Examples

## Not run: 
system("wget http://130.192.119.59/public/testSCumi_mm10.csv.zip")
unzip("testSCumi_mm10.csv.zip")
genesUmi(file=paste(getwd(),"testSCumi_mm10.csv",sep="/"), umiXgene=3, sep=",")

## End(Not run)

kendomaniac/rCASC documentation built on June 10, 2025, 2:52 a.m.